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1.2.5-url - draft Japan

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CodeSystem: JP Core Microbiology InfectiousAgent CodeSystem

項目内容
定義URL urn:oid:1.2.392.100495.10.3.100.5.27.6.1
Version 1.1.0a
Name

JP_Microbiology_InfectiousAgent_CS
Title

JP Core Microbiology InfectiousAgent CodeSystem
Status Active ( 2023-06-26 )
Copyright

Copyright FHIR Japanese implementation research working group in Japan Association of Medical Informatics (JAMI) 一般社団法人日本医療情報学会NeXEHRS課題研究会FHIR日本実装検討WG
厚生労働省院内感染対策サーベイランス事業(https://janis.mhlw.go.jp/)

微生物学的検査感染性物質コード
本コードは厚生労働省院内感染対策サーベイランス事業(https://janis.mhlw.go.jp/)で作成されているマスタを編集・加工して利用している

This Code system is referenced in the content logical definition of the following value sets:

Generated Narrative: CodeSystem jp-microbiology-infectiousagent-cs

This case-sensitive code system urn:oid:1.2.392.100495.10.3.100.5.27.6.1 defines the following codes:

CodeDisplay
1011 Gram-positive cocci
1012 Gram-positive bacilli
1013 Gram-negative cocci
1014 Gram-negative bacilli
1015 Yeasts
1100 Streptococcus sp.
1101 α-Streptococcus
1102 β-Streptococcus
1103 γ-Streptococcus
1111 Streptococcus pyogenes
1114 Streptococcus agalactiae
1117 C群β-Streptococcus
1120 F群β-Streptococcus
1123 G群β-Streptococcus
1131 Streptococcus pneumoniae
1141 Streptococcus mutans
1142 Streptococcus sanguis
1143 Streptococcus mitis
1144 Streptococcus anginosus
1145 Streptococcus intermedius
1146 Streptococcus bovis
1147 Streptococcus salivarius
1148 Streptococcus equinus
1149 Streptococcus uberis
1150 Streptococcus constellatus subsp. constellatus
1151 Streptococcus acidominimus
1152 Streptococcus suis
1153 Streptococcus dysgalactiae subsp. equisimilis
1200 Enterococcus sp.
1201 Enterococcus faecalis
1202 Enterococcus faecalis (VRE)
1205 Enterococcus faecium
1206 Enterococcus faecium (VRE)
1209 Enterococcus avium
1210 Enterococcus avium (VRE)
1213 Enterococcus durans
1214 Enterococcus gallinarum
1215 Enterococcus casseliflavus
1216 Enterococcus casseliflavus/gallinarum
1217 Enterococcus hirae
1300 Staphylococcus sp.
1301 Staphylococcus aureus subsp. aureus
1303 Staphylococcus aureus (MRSA)
1304 Staphylococcus aureus (MSSA)
1305 Staphylococcus aureus (MSSA) (β非産生)
1306 Staphylococcus aureus (MSSA) (β産生)
1311 Staphylococcus ,coagulase negative (CNS)
1312 Staphylococcus epidermidis
1313 Staphylococcus saprophyticus subsp. saprophyticus
1314 Staphylococcus hominis subsp. hominis
1315 Staphylococcus warneri
1316 Staphylococcus lentus
1317 Staphylococcus auricularis
1318 Staphylococcus simulans
1319 Staphylococcus cohnii subsp. cohnii
1320 Staphylococcus xylosus
1321 Staphylococcus sciuri subsp. sciuri
1322 Staphylococcus intermedius
1323 Staphylococcus hyicus
1324 Staphylococcus haemolyticus
1325 Staphylococcus capitis subsp. capitis
1326 Staphylococcus lugdunensis
1327 Staphylococcus pseudintermedius
1328 Staphylococcus schleiferi
1400 Micrococcus sp.
1500 Lactococcus sp.
1501 Lactococcus lactis subsp. lactis
1600 Aerococcus sp.
1800 Neisseria sp.
1801 Neisseria gonorrhoeae
1802 Neisseria gonorrhoeae (β非産生)
1803 Neisseria gonorrhoeae (β産生)
1805 Neisseria meningitidis
1850 Moraxella (Branhamella) sp.
1851 Moraxella (Branhamella) catarrhalis
2000 Escherichia sp.
2001 Escherichia coli
2002 Escherichia coli ,pathogenic
2003 Escherichia coli ,enterohemorrhagic (EHEC)
2004 Escherichia coli ,enteroinvasive (EIEC)
2005 Escherichia coli ,enteropathogenic (EPEC)
2006 Escherichia coli ,enterotoxin-producing (ETEC)
2007 Escherichia coli ,enteroaggregative (EAEC)
2011 Escherichia hermannii
2012 Escherichia vulneris
2013 Escherichia albertii
2050 Citrobacter sp.
2051 Citrobacter freundii
2052 Citrobacter koseri
2053 Citrobacter amalonaticus
2055 Citrobacter braakii
2100 Serratia sp.
2101 Serratia marcescens subsp. marcescens
2102 Serratia liquefaciens
2103 Serratia plymuthica
2104 Serratia rubidaea
2105 Serratia odorifera
2150 Enterobacter sp.
2151 Enterobacter cloacae
2152 Klebsiella aerogenes
2153 Enterobacter sakazakii
2154 Enterobacter gergoviae
2155 Enterobacter asburiae
2156 Enterobacter cancerogenus
2157 Enterobacter hormaechei
2158 Enterobacter kobei
2159 Enterobacter ludwigii
2160 Enterobacter mori
2161 Enterobacter nimipressuralis
2170 Pantoea sp.
2171 Pantoea agglomerans
2200 Proteus sp.
2201 Proteus mirabilis
2202 Proteus vulgaris
2203 Proteus penneri
2250 Morganella sp.
2251 Morganella morganii subsp. morganii
2300 Providencia sp.
2301 Providencia rettgeri
2304 Providencia alcalifaciens
2305 Providencia stuartii
2350 Klebsiella sp.
2351 Klebsiella pneumoniae subsp. pneumoniae
2352 Klebsiella oxytoca
2353 Klebsiella pneumoniae subsp. ozaenae
2354 Klebsiella pneumoniae subsp. rhinoscleromatis
2400 Yersinia sp.
2401 Yersinia enterocolitica subsp. enterocolitica
2402 Yersinia pseudotuberculosis
2403 Yersinia pestis
2450 Salmonella sp.
2451 Salmonella Typhi
2452 Salmonella Paratyphi A
2453 Salmonella sp. (S. Typhi, S. Paratyphi A以外)
2454 Salmonella arizonae
2455 Salmonella Enteritidis
2456 Salmonella Typhimurium
2500 Shigella sp.
2501 Shigella flexneri
2502 Shigella sonnei
2503 Shigella dysenteriae
2504 Shigella boydii
2610 Tatumella sp.
2611 Tatumella ptyseos
2620 Edwardsiella sp.
2621 Edwardsiella tarda
2630 Hafnia sp.
2631 Hafnia alvei
2640 Cedecea sp.
2641 Cedecea davisae
2650 Kluyvera sp.
2651 Kluyvera ascorbata
2660 Leclercia sp.
2661 Leclercia adecarboxylata
2670 Buttiauxella sp.
2671 Buttiauxella agrestis
2680 Ewingella sp.
2681 Ewingella americana
2690 Rahnella sp.
2691 Rahnella aquatilis
3000 Vibrio sp.
3001 Vibrio cholerae O-1
3002 Vibrio cholerae O-139
3003 Vibrio cholerae non O-1
3004 Vibrio parahaemolyticus
3005 Vibrio fluvialis
3006 Vibrio mimicus
3007 Vibrio vulnificus
3008 Vibrio alginolyticus
3009 Vibrio furnissii
3050 Aeromonas sp.
3051 Aeromonas hydrophila subsp. hydrophila
3052 Aeromonas sobria
3053 Aeromonas caviae
3100 Pasteurella sp.
3101 Pasteurella multocida subsp. multocida
3150 Plesiomonas sp.
3151 Plesiomonas shigelloides
3200 Haemophilus sp.
3201 Haemophilus influenzae
3202 Haemophilus influenzae (β非産生)
3203 Haemophilus influenzae (β産生)
3205 Haemophilus influenzae biotypeⅠ
3208 Haemophilus influenzae biotypeⅡ
3211 Haemophilus influenzae biotypeⅢ
3214 Haemophilus influenzae biotypeⅣ
3217 Haemophilus influenzae biotypeⅤ
3220 Haemophilus influenzae biotypeⅥ‐1
3223 Haemophilus influenzae biotypeⅥ‐2
3230 Haemophilus parainfluenzae
3240 Haemophilus haemolyticus
3241 Haemophilus parahaemolyticus
3242 Haemophilus haemoglobinophilus
3243 Haemophilus ducreyi
3244 Haemophilus aphrophilus
3245 Haemophilus paraphrophilus
3250 Gardnerella sp.
3251 Gardnerella vaginalis
3270 Bordetella sp.
3271 Bordetella pertussis
3272 Bordetella parapertussis
3273 Bordetella bronchiseptica
3300 Legionella sp.
3301 Legionella pneumophila subsp. pneumophila
3400 Actinobacillus sp.
3401 Actinobacillus actinomycetemcomitans
3430 Capnocytophaga sp.
3450 Cardiobacterium sp.
3451 Cardiobacterium hominis
3470 Eikenella sp.
3471 Eikenella corrodens
3500 Francisella sp.
3501 Francisella tularensis subsp. tularensis
3550 Brucella sp.
3551 Brucella melitensis biovar. abortus
3553 Brucella melitensis biovar. suis
3554 Brucella melitensis biovar. canis
3556 Brucella melitensis
3700 Campylobacter sp.
3701 Campylobacter jejuni subsp. jejuni
3702 Campylobacter coli
3703 Campylobacter fetus subsp. fetus
3704 Campylobacter jejuni/coli
3730 Helicobacter sp.
3731 Helicobacter pylori
3800 Kingella sp.
3801 Kingella kingae
4000 Pseudomonas sp.
4001 Pseudomonas aeruginosa
4003 Ralstonia pickettii
4011 Pseudomonas putida
4012 Pseudomonas fluorescens
4050 Burkholderia sp.
4051 Burkholderia cepacia
4052 Burkholderia mallei
4053 Burkholderia pseudomallei
4100 Alcaligenes sp.
4101 Alcaligenes faecalis subsp. faecalis
4102 Alcaligenes xylosoxidans subsp. xylosoxidans
4150 Stenotrophomonas sp.
4151 Stenotrophomonas maltophilia
4200 Flavobacterium sp.
4201 Myroides odoratus
4210 Myroides sp.
4250 Chryseobacterium sp.
4251 Chryseobacterium meningosepticum
4252 Chryseobacterium indologenes
4300 Sphingobacterium sp.
4301 Sphingobacterium multivorum
4302 Sphingobacterium spiritivorum
4350 Shewanella sp.
4351 Shewanella putrefaciens
4400 Acinetobacter sp.
4401 Acinetobacter calcoaceticus
4402 Acinetobacter baumannii
4403 Acinetobacter lwoffii
4450 Rhizobium sp.
4451 Rhizobium radiobacter
4500 Moraxella sp.
4501 Moraxella lacunata
4502 Moraxella osloensis
4503 Moraxella bovis
4550 Chryseomonas sp.
4551 Chryseomonas luteola
4600 Comamonas sp.
4601 Delftia acidovorans
4610 Delftia sp.
4650 Flavimonas sp.
4651 Flavimonas oryzihabitans
5000 Peptostreptococcus sp.
5001 Finegoldia magna
5002 Anaerococcus prevotii
5003 Peptoniphilus asaccharolyticus
5004 Peptostreptococcus anaerobius
5005 Ruminococcus productus
5006 Micromonas micros
5020 Peptococcus sp.
5021 Peptococcus niger
5030 Anaerococcus sp.
5033 Finegoldia sp.
5036 Parvimonas sp.
5039 Peptoniphilus sp.
5042 Ruminococcus sp.
5050 Clostridium sp.
5051 Clostridium difficile
5052 Clostridium perfringens
5053 Clostridium tetani
5054 Clostridium botulinum
5055 Clostridium septicum
5100 Eubacterium sp.
5101 Eggerthella lenta
5110 Eggerthella sp.
5150 Propionibacterium sp.
5151 Propionibacterium acnes
5200 Bifidobacterium sp.
5400 Mobiluncus sp.
5500 Bacteroides sp.
5501 Bacteroides fragilis
5502 Bacteroides ovatus
5503 Bacteroides thetaiotaomicron
5504 Bacteroides vulgatus
5505 Bacteroides distasonis
5506 Bacteroides uniformis
5507 Bacteroides caccae
5550 Prevotella sp.
5551 Prevotella melaninogenica
5552 Prevotella oralis
5553 Prevotella ruminicola subsp. ruminicola
5554 Prevotella bivia
5555 Prevotella buccae
5556 Prevotella denticola
5557 Prevotella loescheii
5558 Prevotella intermedia
5559 Prevotella corporis
5600 Porphyromonas sp.
5601 Porphyromonas asaccharolytica
5602 Porphyromonas gingivalis
5650 Fusobacterium sp.
5651 Fusobacterium nucleatum subsp. nucleatum
5652 Fusobacterium varium
5653 Fusobacterium necrophorum subsp. necrophorum
5654 Fusobacterium mortiferum
5800 Veillonella sp.
5801 Veillonella parvula
5900 Lactobacillus sp.
6000 Corynebacterium sp.
6001 Corynebacterium diphtheriae
6002 Corynebacterium jeikeium
6050 Listeria sp.
6051 Listeria monocytogenes
6100 Bacillus sp.
6101 Bacillus cereus
6102 Bacillus subtilis subsp. subtilis
6103 Bacillus anthracis
6200 Nocardia sp.
6201 Nocardia asteroides
6203 Nocardia brasiliensis
6300 Actinomyces sp.
6301 Actinomyces israelii
6500 Mycobacterium sp.
6501 Mycobacterium tuberculosis
6502 Mycobacterium tuberculosis complex
6503 Mycobacterium avium subsp. avium
6504 Mycobacterium intracellulare
6505 Mycobacterium avium complex
6506 Mycobacterium kansasii
6507 Mycobacterium marinum
6508 Mycobacterium scrofulaceum
6509 Mycobacterium gordonae
6510 Mycobacterium fortuitum subsp. fortuitum
6511 Mycobacterium chelonae subsp. chelonae
6512 Mycobacterium abscessus
7000 Candida sp.
7001 Candida albicans
7002 Candida tropicalis
7003 Candida glabrata
7004 Candida parapsilosis
7005 Candida krusei
7006 Candida guilliermondii
7007 Candida dubliniensis
7008 Candida auris
7110 Cryptococcus sp.
7111 Cryptococcus neoformans
7120 Trichosporon sp.
7122 Trichosporon capitatum
7123 Trichosporon asahii
7124 Trichosporon mucoides
7130 Rhodotorula sp.
7131 Rhodotorula rubra
7140 Saccharomyces sp.
7141 Saccharomyces cerevisiae
7150 Malassezia sp.
7151 Malassezia furfur
7300 Aspergillus sp.
7301 Aspergillus flavus
7302 Aspergillus fumigatus
7303 Aspergillus nidulans
7304 Aspergillus niger
7305 Aspergillus terreus
7310 Penicillium sp.
7311 Penicillium marneffei
7320 Trichophyton sp.
7321 Trichophyton rubrum
7322 Trichophyton mentagrophytes
7323 Trichophyton tonsurans
7330 Microsporum sp.
7331 Microsporum canis
7332 Microsporum gypseum
7340 Cladosporium sp.
7350 Fonsecaea sp.
7351 Fonsecaea pedrosoi
7360 Alternaria sp.
7361 Alternaria tenuissima
7362 Alternaria alternata
7400 Epidermophyton sp.
7401 Epidermophyton floccosum
7410 Sporothrix sp.
7411 Sporothrix schenckii
7420 Fusarium sp.
7421 Fusarium solani
7430 Absidia sp.
7431 Absidia corymbifera
7500 Mucor sp.
7501 Mucor circinelloides
7510 Rhizomucor sp.
7511 Rhizomucor pusillus
7520 Rhizopus sp.
7521 Rhizopus oryzae
7530 Coccidioides sp.
7531 Coccidioides immitis
7540 Histoplasma sp.
7541 Histoplasma capsulatum
7550 Blastomyces sp.
7551 Blastomyces dermatitidis
7560 Paracoccidioides sp.
7561 Paracoccidioides brasiliensis
7900 Pneumocystis sp.
7901 Pneumocystis carinii
7902 Pneumocystis jirovecii
8000 Mycoplasma sp.
8001 Mycoplasma pneumoniae
8100 Ureaplasma sp.
8101 Ureaplasma urealyticum
8200 Chlamydia sp.
8201 Chlamydia trachomatis
8202 Chlamydophila psittaci
8203 Chlamydophila pneumoniae
8204 Chlamydophila pecorum
8210 Chlamydophila sp.
8300 Treponema sp.
8301 Treponema pallidum
8400 Leptospira sp.
8401 Leptospira interrogans
8402 Leptotrichia buccalis
8500 Borrelia sp.
8501 Borrelia burgdorferi
8600 Rickettsia sp.
9000 Entamoeba sp.
9001 Entamoeba histolytica
9010 Cryptosporidium sp.
9011 Cryptosporidium parvum
9012 Cryptosporidium muris
9020 Cyclospora sp.
9021 Cyclospora cayetanensis
9030 Isospora sp.
9040 Giardia sp.
9041 Giardia lamblia
9050 Balantidium sp.
9051 Balantidium coli
9060 Acanthamoeba sp.
9070 Trichomonas sp.
9071 Trichomonas vaginalis
9080 Toxoplasma sp.
9081 Toxoplasma gondii
9801 Acholeplasma
9802 Acidaminococcus
9803 Acidovorax
9805 Actinomadura
9806 Afipia
9807 Alloiococcus
9808 Anaerobiospirillum
9809 Anaerorhabdus
9810 Arcanobacterium
9811 Arthrobacter
9812 Atopobium
9813 Balneatrix
9814 Bartonella
9815 Bergeyella
9816 Bilophila
9817 Brachyspira
9818 Bradyrhizobium
9819 Brevibacterium
9820 Brevundimonas
9821 Brochothrix
9822 Budvicia
9823 Butyrivibrio
9824 Calymmatobacterium
9825 Catonella
9826 Cellulomonas
9827 Chromobacterium
9829 Coxiella
9830 Dermabacter
9831 Dermacoccus
9832 Dermatophilus
9834 Desulfovibrio
9835 Dialister
9836 Dolosigranulum
9837 Ehrlichia
9838 Empedobacter
9839 Erwinia
9840 Erysipelothrix
9841 Fibrobacter
9842 Gemella
9843 Globicatella
9844 Gordonia
9846 Hallella
9847 Halococcus
9848 Janthinobacterium
9849 Johnsonella
9850 Kocuria
9851 Kurthia
9852 Kytococcus
9853 Lautropia
9854 Lawsonia
9855 Leminorella
9857 Leuconostoc
9858 Listonella
9859 Methylobacterium
9860 Mitsuokella
9861 Moellerella
9862 Nesterenkonia
9863 Nocardiopsis
9864 Obesumbacterium
9865 Ochrobactrum
9866 Oenococcus
9867 Oerskovia
9868 Oligella
9869 Orientia
9870 Paenibacillus
9871 Pediococcus
9872 Photobacterium
9873 Photorhabdus
9874 Pragia
9875 Propioniferax
9876 Psychrobacter
9877 Rhodococcus
9878 Riemerella
9879 Rikenella
9880 Rothia
9882 Sanguibacter
9883 Sebaldella
9884 Selenomonas
9885 Serpulina
9886 Sphingomonas
9887 Spiroplasma
9889 Streptobacillus
9890 Streptomyces
9891 Succinivibrio
9892 Suttonella
9893 Taylorella
9894 Tetragenococcus
9895 Thermoactinomyces
9896 Tissierella
9897 Trabulsiella
9898 Tsukamurella
9899 Turicella
9900 Vagococcus
9901 Weeksella
9902 Weissella
9903 Wolinella
9904 Xenorhabdus
9905 Yokenella
9998 その他の菌種 (同定不能の菌を含む)
9999 コメントのみ